CDS
| Accession Number | TCMCG007C39159 |
| gbkey | CDS |
| Protein Id | XP_009151146.1 |
| Location | complement(join(22810883..22811059,22811304..22811358,22811441..22811487,22811577..22811633,22811728..22811842,22812113..22812194,22812304..22812388,22812464..22812583,22812715..22812765,22812866..22812931,22813047..22813094,22813194..22813242,22813310..22813363,22813463..22813522,22813633..22813691,22813782..22813898,22813993..22814004)) |
| Gene | LOC103874470 |
| GeneID | 103874470 |
| Organism | Brassica rapa |
Protein
| Length | 417aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA249065 |
| db_source | XM_009152898.3 |
| Definition | flap endonuclease 1 isoform X1 [Brassica rapa] |
EGGNOG-MAPPER Annotation
| COG_category | L |
| Description | Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03032 [VIEW IN KEGG] ko03400 [VIEW IN KEGG] ko04147 [VIEW IN KEGG] |
| KEGG_ko |
ko:K04799
[VIEW IN KEGG] |
| EC | - |
| KEGG_Pathway |
ko03030
[VIEW IN KEGG] ko03410 [VIEW IN KEGG] ko03450 [VIEW IN KEGG] map03030 [VIEW IN KEGG] map03410 [VIEW IN KEGG] map03450 [VIEW IN KEGG] |
| GOs | - |
Sequence
| CDS: ATGGGTATCAAGGGATTAACGAAGCTTTTGGCGGACAATGCGCCTAGCGCCATGAAAGAGCAGAAATTCGAGAGCTACTTCGGTCGGAAAATAGCAGTTGATGCAAGCATGAGCATTTACCAGTTCCTTATTGTGGTGGGGAGGACTGGGACTGAGATGCTCACCAATGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAATCGAACCATTCGTCTTCTCGAAGCTGGAATTAAGCCTGTGTATGTTTTTGATGGAAAGCCTCCGGAGTTAAAGAGACAAGAGCTAGCCAAACGTTACTCCAAGAGAGCCGATGCAACTGCAGATTTGAGTGGTGCAATTGAGGCAGGGAACAAGGAGGACATTGAGAAGTACAGCAAACGAACTGTGAAGGTGACAAAGCAACACAATGACGACTGCAAAAGACTCTTGAAACTCATGGGGGTGCCCGTTGTTGAGGCCACTTCCGAAGCAGAAGCGCAATGTGCTGCACTTTGCAAAGCAGGAAAGGTGTATGGTGTGGCTTCTGAAGATATGGACTCCTTGACTTTTGGAGCTCCTAAGTTTCTTCGCCACCTGATGGATCCTAGCTCCAGAAAGATCCCTGTCATGGAATTTGACGTTGCCAAGATTTTAGAAGAGCTTCAACTTACCATGGATCAGTTCATCGACTTGTGCATATTGTCAGGATGTGACTATTGTGATAGCATCCGTGGTATCGGAGGGCAGACTGCCTTAAAGCTCATTCGCCAGCATGGCTCTATTGAGACTATACTCGAAAATATAAACAAAGAAAGGTATCAGATACCCGAGGAATGGCCATATAATGAAGCTCGTAAACTTTTTAAAGAACCTGATGTCTTAACTGATGAAGAGCAGCTCGATATCAAGTGGACCTCTCCAGATGAAGAGGGTATAGTTCAGTTTTTGGTGAATGAAAATGGATTCAACATAGATAGGGTAACCAAGGCGGTAGAGAAAATCAAATCTGCCAAGAACAAGTCATCCCAGGGAAGGTTGGAGTCATTTTTCAAGCCAGTCGCTAGCTCATCCGTGCCTGCTAAAAGAAAGGGTACCAAATGCTTACTCCGGCAGTATAAACCAGCTATCAGCAATAAAATGTCCTCTGTGCATGCTTTTGGATGTAACACCTCCAATAACATTGTTAGCCTTAGGCTGTTCCCTCTAATCCCGGGTTCCAACCTCTCTGTTCAAATGGCTGGAGCTGGCATATGCACAAGATTCTAA |
| Protein: MGIKGLTKLLADNAPSAMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPELKRQELAKRYSKRADATADLSGAIEAGNKEDIEKYSKRTVKVTKQHNDDCKRLLKLMGVPVVEATSEAEAQCAALCKAGKVYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFDVAKILEELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENINKERYQIPEEWPYNEARKLFKEPDVLTDEEQLDIKWTSPDEEGIVQFLVNENGFNIDRVTKAVEKIKSAKNKSSQGRLESFFKPVASSSVPAKRKGTKCLLRQYKPAISNKMSSVHAFGCNTSNNIVSLRLFPLIPGSNLSVQMAGAGICTRF |